Package: MAGEE 1.4.2

MAGEE: Mixed Model Association Test for GEne-Environment Interaction

Use a 'glmmkin' class object (GMMAT package) from the null model to perform generalized linear mixed model-based single-variant and variant set main effect tests, gene-environment interaction tests, and joint tests for association, as proposed in Wang et al. (2020) <doi:10.1002/gepi.22351>.

Authors:Xinyu Wang [aut], Han Chen [aut, cre], Duy Pham [aut], Kenneth Westerman [ctb], Cong Pan [aut], Eric Biggers [ctb, cph], Tino Reichardt [ctb, cph], Meta Platforms, Inc. and affiliates [cph]

MAGEE_1.4.2.tar.gz
MAGEE_1.4.2.zip(r-4.5)MAGEE_1.4.2.zip(r-4.4)MAGEE_1.4.2.zip(r-4.3)
MAGEE_1.4.2.tgz(r-4.4-x86_64)MAGEE_1.4.2.tgz(r-4.4-arm64)MAGEE_1.4.2.tgz(r-4.3-x86_64)MAGEE_1.4.2.tgz(r-4.3-arm64)
MAGEE_1.4.2.tar.gz(r-4.5-noble)MAGEE_1.4.2.tar.gz(r-4.4-noble)
MAGEE_1.4.2.tgz(r-4.4-emscripten)MAGEE_1.4.2.tgz(r-4.3-emscripten)
MAGEE.pdf |MAGEE.html✨
MAGEE/json (API)

# Install 'MAGEE' in R:

install.packages('MAGEE', repos = c('https://hanchenphd.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hanchenphd/magee/issues

Uses libs:

openblas– Optimized BLAS
libzstd– Fast lossless compression algorithm
libdeflate– Fast, whole-buffer DEFLATE-based compression and decompression
c++– GNU Standard C++ Library v3

Datasets:

example - Example dataset

On CRAN:

5.08 score 9 scripts 333 downloads 2 mentions 6 exports 11 dependencies

Last updated 4 months agofrom:169f01abf7. Checks:OK: 6 ERROR: 1 NOTE: 2. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 23 2024
R-4.5-win-x86_64	OK	Nov 23 2024
R-4.5-linux-x86_64	ERROR	Nov 23 2024
R-4.4-win-x86_64	NOTE	Nov 23 2024
R-4.4-mac-x86_64	OK	Nov 23 2024
R-4.4-mac-aarch64	OK	Nov 23 2024
R-4.3-win-x86_64	NOTE	Nov 23 2024
R-4.3-mac-x86_64	OK	Nov 23 2024
R-4.3-mac-aarch64	OK	Nov 23 2024

Exports:glmm.gei glmm.gei.meta MAGEE MAGEE.lowmem MAGEE.meta MAGEE.prep

Dependencies:codetools CompQuadForm data.table foreach GMMAT iterators lattice MASS Matrix Rcpp RcppArmadillo

MAGEE

Rendered fromMAGEE.Rnwusingutils::Sweaveon Nov 23 2024.

Last update: 2024-07-26
Started: 2021-05-04

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Mixed Model Association Test for GEne-Environment Interaction	MAGEE-package
Example dataset	example
GLMM based single variant tests for gene-environment interactions	glmm.gei
GLMM based meta-analysis of single variant tests for gene-environment interactions	glmm.gei.meta
Mixed model Association tests for GEne-Environment interactions	MAGEE MAGEE.lowmem MAGEE.prep
Mixed model Association tests for GEne-Environment interactions meta-analysis	MAGEE.meta