Package: MAGEE 1.4.2

MAGEE: Mixed Model Association Test for GEne-Environment Interaction

Use a 'glmmkin' class object (GMMAT package) from the null model to perform generalized linear mixed model-based single-variant and variant set main effect tests, gene-environment interaction tests, and joint tests for association, as proposed in Wang et al. (2020) <doi:10.1002/gepi.22351>.

Authors:Xinyu Wang [aut], Han Chen [aut, cre], Duy Pham [aut], Kenneth Westerman [ctb], Cong Pan [aut], Eric Biggers [ctb, cph], Tino Reichardt [ctb, cph], Meta Platforms, Inc. and affiliates [cph]

MAGEE_1.4.2.tar.gz
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MAGEE_1.4.2.tgz(r-4.4-x86_64)MAGEE_1.4.2.tgz(r-4.4-arm64)MAGEE_1.4.2.tgz(r-4.3-x86_64)MAGEE_1.4.2.tgz(r-4.3-arm64)
MAGEE_1.4.2.tar.gz(r-4.5-noble)MAGEE_1.4.2.tar.gz(r-4.4-noble)
MAGEE_1.4.2.tgz(r-4.4-emscripten)MAGEE_1.4.2.tgz(r-4.3-emscripten)
MAGEE.pdf |MAGEE.html✨
MAGEE/json (API)

# Install 'MAGEE' in R:
install.packages('MAGEE', repos = c('https://hanchenphd.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/hanchenphd/magee/issues

Uses libs:
  • openblas– Optimized BLAS
  • libzstd– Fast lossless compression algorithm
  • libdeflate– Fast, whole-buffer DEFLATE-based compression and decompression
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

6 exports 1.78 score 11 dependencies 2 mentions 8 scripts 546 downloads

Last updated 2 months agofrom:169f01abf7. Checks:OK: 5 ERROR: 1 NOTE: 3. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 25 2024
R-4.5-win-x86_64NOTEAug 25 2024
R-4.5-linux-x86_64ERRORAug 25 2024
R-4.4-win-x86_64NOTEAug 25 2024
R-4.4-mac-x86_64OKAug 25 2024
R-4.4-mac-aarch64OKAug 25 2024
R-4.3-win-x86_64NOTEAug 25 2024
R-4.3-mac-x86_64OKAug 25 2024
R-4.3-mac-aarch64OKAug 25 2024

Exports:glmm.geiglmm.gei.metaMAGEEMAGEE.lowmemMAGEE.metaMAGEE.prep

Dependencies:codetoolsCompQuadFormdata.tableforeachGMMATiteratorslatticeMASSMatrixRcppRcppArmadillo

MAGEE

Rendered fromMAGEE.Rnwusingutils::Sweaveon Aug 25 2024.

Last update: 2024-07-26
Started: 2021-05-04