Package: MAGEE 1.4.5

MAGEE: Mixed Model Association Test for GEne-Environment Interaction

Use a 'glmmkin' class object (GMMAT package) from the null model to perform generalized linear mixed model-based single-variant and variant set main effect tests, gene-environment interaction tests, and joint tests for association, as proposed in Wang et al. (2020) <doi:10.1002/gepi.22351>.

Authors:Xinyu Wang [aut], Han Chen [aut, cre], Duy Pham [aut], Kenneth Westerman [ctb], Cong Pan [aut], Eric Biggers [ctb, cph], Tino Reichardt [ctb, cph], Meta Platforms, Inc. and affiliates [cph]

MAGEE_1.4.5.tar.gz
MAGEE_1.4.5.zip(r-4.7-x86_64)MAGEE_1.4.5.zip(r-4.7-arm64)MAGEE_1.4.5.zip(r-4.6-x86_64)MAGEE_1.4.5.zip(r-4.6-arm64)MAGEE_1.4.5.zip(r-4.5-x86_64)
MAGEE_1.4.5.tgz(r-4.6-x86_64)MAGEE_1.4.5.tgz(r-4.6-arm64)MAGEE_1.4.5.tgz(r-4.5-x86_64)MAGEE_1.4.5.tgz(r-4.5-arm64)
MAGEE_1.4.5.tar.gz(r-4.7-arm64)MAGEE_1.4.5.tar.gz(r-4.7-x86_64)MAGEE_1.4.5.tar.gz(r-4.6-arm64)MAGEE_1.4.5.tar.gz(r-4.6-x86_64)
MAGEE_1.4.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MAGEE/json (API)

# Install 'MAGEE' in R:

install.packages('MAGEE', repos = c('https://hanchenphd.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hanchenphd/magee/issues

Uses libs:

openblas– Optimized BLAS
libzstd– Fast lossless compression algorithm
libdeflate– Fast, whole-buffer DEFLATE-based compression and decompression
c++– GNU Standard C++ Library v3

Datasets:

example - Example dataset

On CRAN:

openblas libzstd libdeflate cpp

4.95 score 10 scripts 372 downloads 2 mentions 6 exports 11 dependencies

Last updated from:936739f241. Checks:13 OK, 2 ERROR. Indexed: yes.

Target	Result	Time
linux-devel-arm64	OK	175
linux-devel-x86_64	OK	206
source / vignettes	OK	255
linux-release-arm64	OK	173
linux-release-x86_64	OK	197
macos-release-arm64	OK	169
macos-release-x86_64	OK	375
macos-oldrel-arm64	OK	172
macos-oldrel-x86_64	OK	322
windows-devel-arm64	ERROR	306
windows-devel-x86_64	OK	253
windows-release-arm64	ERROR	302
windows-release-x86_64	OK	217
windows-oldrel-x86_64	OK	201
wasm-release	OK	126

Exports:glmm.gei glmm.gei.meta MAGEE MAGEE.lowmem MAGEE.meta MAGEE.prep

Dependencies:codetools CompQuadForm data.table foreach GMMAT iterators lattice MASS Matrix Rcpp RcppArmadillo

MAGEE

Rendered fromMAGEE.Rnwusingutils::Sweave

Last update: 2026-02-12
Started: 2021-05-04

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Mixed Model Association Test for GEne-Environment Interaction	MAGEE-package
Example dataset	example
GLMM based single variant tests for gene-environment interactions	glmm.gei
GLMM based meta-analysis of single variant tests for gene-environment interactions	glmm.gei.meta
Mixed model Association tests for GEne-Environment interactions	MAGEE MAGEE.lowmem MAGEE.prep
Mixed model Association tests for GEne-Environment interactions meta-analysis	MAGEE.meta